biospecimenSubtype
Biospecimen status before sample is processed into a scRNA-seq library. Several scRNA-seq technologies support a variety of sample processing methods which can introduces sources of technical variation.
Valid Values | Description | Source |
---|---|---|
FFPE tissue | formalin-fixed paraffin-embedded preservation of tissue | |
PFA-fixed tissue | Paraformaldehyde fixation to preserve tissue, often for immunohistochemistry (IHC) | |
cell suspension | A mixture of single or disaggregated cell suspended in a liquid solution. | |
flow-sorted cells | A cell suspension sample that has undergone fluorescence-activated cell sorting based on protein expression and cellular composition | |
fresh tissue | Tissue that has not been fixed or preserved | |
frozen tissue | Tissue that has been preserved by freezing at very low temperatures | |
nuclei suspension | Isolated cell nuclei suspended in a liquid solution |